How to cite us

If you publish results generated using ksrates, please cite:

Sensalari C., Maere S. and Lohaus R. (2021) ksrates: positioning whole-genome duplications relative to speciation events in K_S distributions. Bioinformatics, Volume 38, Issue 2, January 2022, Pages 530–532, doi: https://doi.org/10.1093/bioinformatics/btab602

BibTex format:

@article{sensalari2021ksrates,
    author = {Sensalari, Cecilia and Maere, Steven and Lohaus, Rolf},
    title = "{ksrates: positioning whole-genome duplications relative to speciation events in KS distributions}",
    journal = {Bioinformatics},
    volume = {38},
    number = {2},
    pages = {530-532},
    year = {2021},
    month = {08},
    abstract = "{We present ksrates, a user-friendly command-line tool to position ancient whole-genome duplication events with respect to speciation events in a phylogeny by comparing paralog and ortholog KS distributions derived from genomic or transcriptomic sequences, while adjusting for substitution rate differences among the lineages involved.ksrates is implemented in Python 3 and as a Nextflow pipeline. The source code, Singularity and Docker containers, documentation and tutorial are available via https://github.com/VIB-PSB/ksrates.Supplementary data are available at Bioinformatics online.}",
    issn = {1367-4803},
    doi = {10.1093/bioinformatics/btab602},
    url = {https://doi.org/10.1093/bioinformatics/btab602},
    eprint = {https://academic.oup.com/bioinformatics/article-pdf/38/2/530/49006673/btab602\_supplementary\_data.pdf},
}